2021 Emergency Drought Salinity Barrier Project Water Quality Certification

California State Water Resources Control Board (SWRCB) | May 28th, 2021

The California Department of Water Resources (DWR) is proposing to implement the 2021 Emergency Drought Salinity Barrier Project (Project). The Project consists of instal

The California Department of Water Resources (DWR) is proposing to implement the 2021 Emergency Drought Salinity Barrier Project (Project). The Project consists of installation of a temporary emergency drought salinity barrier across West False River in the Sacramento-San Joaquin Delta (Delta). The barrier will be constructed of embankment rock (riprap). The purpose of the Project is to control saltwater intrusion into the Central and south Delta and conserve water in upstream reservoirs for other uses. Pursuant to Clean Water Act section 401, the State Water Resources Control Board (State Water Board) has authority to consider whether a proposed activity involving a discharge to navigable waters complies with applicable water quality standards and other appropriate requirements of state law and to issue a water quality certification if those requirements will be met. The State Water Board concludes that, as conditioned herein, water quality certification may be issued.  During drought conditions, the release of water stored in upstream reservoirs may be insufficient to repel salinity moving upstream from San Francisco Bay. According to DWR’s analyses, without the protection of the drought salinity barrier, saltwater intrusions could render Delta water unusable for agricultural needs, reduce habitat value for aquatic species, and affect roughly 25 million Californians who rely on the export of this water for personal use. Installation of the temporary rock barrier at West False River would limit salinity intrusion into the Central and south Delta and would potentially conserve water for a variety of uses system-wide.  On May 10, 2021, California Governor Gavin Newsom issued a Proclamation of State of Emergency (May 2021 Proclamation) due to drought conditions and directed DWR, among other things, to implement plans that address potential Delta salinity issues, including installation and removal of emergency drought salinity barriers as needed. The May 2021 Proclamation mandates that such emergency barriers be designed to conserve water for use later in the year to meet state and federal Endangered Species Act requirements, preserve to the extent possible water quality in the Delta, and retain water supply for human health and safety uses. The State Water Board and the California Department of Fish and Wildlife (CDFW) are also directed to immediately consider any necessary regulatory approvals needed to install emergency drought salinity barriers. Additionally, the May 2021 Proclamation suspends Water Code section 13247, which requires state agencies to comply with water quality control plans approved by the State Water Board, and suspends the California Environmental Quality Act (CEQA) for purpose of implementing actions such as the Project.  Installation and removal of the Project will require a permit from the United States Army Corps of Engineers (USACE) pursuant to Section 404 of the Clean Water Act. DWR is seeking emergency authorization under USACE’s Regional General Permit (RGP) 8 – Emergency Repair and Protection Activities. 

2024 5-Year Review: Summary & Evaluation of Northern California Steelhead

National Oceanic and Atmospheric Administration (NOAA) | July 9th, 2024

Many West Coast salmon and steelhead (Oncorhynchus spp.) stocks have declined substantially from their historic numbers and now are at a fraction of their historical abun

Many West Coast salmon and steelhead (Oncorhynchus spp.) stocks have declined substantially from their historic numbers and now are at a fraction of their historical abundance. Several factors contribute to these declines, including: overfishing, loss of freshwater and estuarine habitat, hydropower development, poor ocean conditions, and hatchery practices. These factors collectively led to the National Marine Fisheries Service’s (NMFS) listing of 28 salmon and steelhead stocks in California, Idaho, Oregon, and Washington under the Federal Endangered Species Act (ESA). The ESA, under section 4(c)(2), directs the Secretary of Commerce to review the listing classification of threatened and endangered species at least once every 5 years. A 5-year review is a periodic analysis of a species’ status conducted to ensure that the listing classification of a species as threatened or endangered on the List of Endangered and Threatened Wildlife and Plants (List) (50 CFR 17.11 – 17.12; 50 CFR 223.102, 224.101) is accurate (USFWS and NMFS 2006; NMFS 2020). After completing this review, the Secretary must determine if any species should: (1) be removed from the list; (2) have its status changed from endangered to threatened; or (3) have its status changed from threatened to endangered. If, in the 5-year review, a change in classification is recommended, the recommended change will be further considered in a separate rule-making process. The most recent 5-year review analysis for West Coast salmon and steelhead occurred in 2016. This document describes the results of the 2024 review of ESA-listed Northern California steelhead (NC steelhead). A 5-year review is: • A summary and analysis of available information on a given species; • The tracking of a species’ progress toward recovery; • The recording of the deliberative process used to make a recommendation on whether or not to reclassify a species; • A recommendation on whether reclassification of the species is indicated.

A comparison of the taxonomic and trait structure of macroinvertebrate communities between the riffles and pools of montane headwater streams

Hydrobiologia (Springer) | May 30th, 2018

Macroinvertebrate community taxonomic and trait structure showed consistent differences between riffles and pools across 12 headwater streams in the Sierra Nevada (Cali

Macroinvertebrate community taxonomic and trait structure showed consistent differences between riffles and pools across 12 headwater streams in the Sierra Nevada (California) even as flows varied from wet to dry years and between seasons. Densities of Ephemeroptera, Plecoptera, Trichoptera, Elmidae, Orthocladiinae and Diamesinae midges, and mites were greater in riffles, whereas Tanypodinae, Chironominae, Sialis, and Pisidium were more abundant in pools. Pools had higher densities but estimated biomass was greater in riffles. Collector-gatherer and micropredator abundances were greater in pools whereas grazers, collector-filterers, and macropredators were more abundant in riffles. Stonefly shredders were most abundant in riffles but some caddis shredders were more abundant in pools. Trait state patterns were related to food resource and physical habitat differences between riffles and pools. Of the distinct pool–riffle differences we found among taxa, only about half conformed to expectations from the literature. Pool and riffle assemblages were most dissimilar at intermediate discharge and converged at low and high flows when one or the other habitat dominated. Bioassessment sampling will need to account for these flow-related differences. Benthic invertebrate communities in these mountain streams clearly differ between pools and riffles, but the relative extent of habitats and biological similarity shift with flow regime.

A Delta Transformed: Ecological Functions, Spatial Metrics, and Landscape Change in the Sacramento-San Joaquin Delta

San Francisco Estuary Institute (SFEI) | October 1st, 2014

In A Delta Transformed, completed in 2014, SFEI researchers used the spatial data generated in the Delta Historical Ecology Investigation, as well as updated modern veget

In A Delta Transformed, completed in 2014, SFEI researchers used the spatial data generated in the Delta Historical Ecology Investigation, as well as updated modern vegetation and land cover datasets, to carry out detailed analyses of how the Delta landscape has been altered since the early-1800s. By quantifying changes in metrics relevant to native wildlife (such as the extent and timing of inundation, habitat patch sizes, length of channel networks), the report provides a foundation for defining, designing, and evaluating landscapes that support desirable ecological functions in the future. See more at: http://www.sfei.org/projects/delta-landscapes-project#sthash.RryQdaII.dpuf

A Framework for Research Addressing the Role of Ammonia/Ammonium in the Sacramento-San Joaquin Delta and the San Francisco Bay Estuary Ecosystem

CALFED | April 13th, 2009

The Sacramento-San Joaquin Delta and the San Francisco Bay Estuary ecosystem has been drastically altered by human activity since at least the mid-1800s, leading to numer

The Sacramento-San Joaquin Delta and the San Francisco Bay Estuary ecosystem has been drastically altered by human activity since at least the mid-1800s, leading to numerous physical, chemical and biological changes [e.g., see Healey (2008) and Healey et al. (2008) for overviews]. Recent concerns include (1) the precipitous decline of four fish species that inhabit the Delta (collectively referred to as the pelagic organism decline, or POD) and (2) apparent major shifts in community composition of algae and higher trophic levels in the Delta and downstream in Suisun Bay. The four POD species of concern are delta smelt (longfin smelt), threadfin shad and striped bass. One of the potential causes of the POD and the community changes is the discharge of increasing concentrations of a combination of ammonia (NH3) and ammonium (NH4+) into the Delta ecosystem and eventually into Suisun Bay. For brevity, we hereafter abbreviate the ammonia/ammonium combination as ammonia/um. To address the potential for adverse effects of ammonia/um on the Bay-Delta ecosystem, a ammonia/um workshop was convened by the CALFED Science Program on 10 and 11 March 2009 in Sacramento, California. We participated as an expert panel and were charged with preparing a framework for research that will address the role of ammonia/um in the Bay-Delta ecosystem. In this report, we present our perception and interpretation of the major concerns related to ammonia/um in the Bay-Delta ecosystem; a conceptual framework of the major physical, chemical and biological drivers controlling the ecosystem (including POD populations); our assessment of the major research needs; and concluding remarks. For some research needs, we recommend specific types of research and provide literature citations; however, for other research needs we recommend general approaches for which targeted research will be determined later. In many ways, Bay-Delta research is breaking new ground by tackling a large-scale, complex freshwater-estuarine ecosystem affected by multiple, interactive stressors. Consequently, the Bay-Delta research program will establish a template for future research and management decisions in other hydrologically, biogeochemically, and trophically-similar systems, rather than relying on paths trodden by others.

A freshwater conservation blueprint for California: prioritizing watersheds for freshwater biodiversity

Society for Freshwater Science | April 18th, 2018

Conservation scientists have adapted conservation planning principles designed for protection of habi- tats ranging from terrestrial to freshwater ecosystems. We

Conservation scientists have adapted conservation planning principles designed for protection of habi- tats ranging from terrestrial to freshwater ecosystems. We applied current approaches in conservation planning to prioritize California watersheds for management of biodiversity. For all watersheds, we compiled data on the pre- sence/absence of herpetofauna and fishes; observations of freshwater-dependent mammals, selected invertebrates, and plants; maps of freshwater habitat types; measures of habitat condition and vulnerability; and current manage- ment status. We analyzed species-distribution data to identify areas of high freshwater conservation value that op- timized representation of target taxa on the landscape and leveraged existing protected areas. The resulting priority network encompasses 34% of the area of California and includes ≥10% of the geographic range for all target taxa. High-value watersheds supported nontarget freshwater taxa and habitats, and focusing on target taxa may provide broad conservation value. Most of the priority conservation network occurs on public lands (69% by area), and 46% overlaps with protected areas already managed for biodiversity. A significant proportion of the network area is on private land and underscores the value of programs that incentivize landowners to manage freshwater species and habitats. The priority conservation areas encompass more freshwater habitats/ha than existing protected areas. Land use (agriculture and urbanization), altered fire regimes, nonnative fish communities, and flow impairment are the most important threats to freshwater habitat in the priority network, whereas factors associated with changing climate are the key drivers of habitat vulnerability. Our study is a guide to a comprehensive approach to freshwater conservation currently lacking in California. Conservation resources are often limited, so prioritiza- tion tools are valuable assets to land and water managers.

A functional flows approach to selecting ecologically relevant flow metrics for environmental flow applications

River Research and Applications (Wiley) | January 8th, 2020

A geohydrologic reconnaissance of the Saratoga Spring area, Death Valley National Monument, California

U.S. Geological Survey (USGS) | March 1st, 1966

A global spatial analysis reveals where marine aquaculture can benefit nature and people

PLOS | October 9th, 2019

Aquaculture of bivalve shellfish and seaweed represents a global opportunity to simultaneously advance coastal ecosystem recovery and provide substantive benefits to hum

Aquaculture of bivalve shellfish and seaweed represents a global opportunity to simultaneously advance coastal ecosystem recovery and provide substantive benefits to humanity. To identify marine ecoregions with the greatest potential for development of shellfish and seaweed aquaculture to meet this opportunity, we conducted a global spatial analysis using key environmental (e.g., nutrient pollution status), socioeconomic (e.g., governance quality), and human health factors (e.g., wastewater treatment prevalence). We identify a substantial opportunity for strategic sector development, with the highest opportunity marine ecoregions for shellfish aquaculture centered on Oceania, North America, and portions of Asia, and the highest opportunity for seaweed aquaculture distributed throughout Europe, Asia, Oceania, and North and South America. This study provides insights into specific areas where governments, international development organizations, and investors should prioritize new efforts to drive changes in public policy, capacity-building, and business planning to realize the ecosystem and societal benefits of shellfish and seaweed aquaculture.

A Machine Learning Approach to Predict Groundwater Levels in California Reveals Ecosystems at Risk

Frontiers in Earth Science (Frontiers) | December 17th, 2021

Groundwater dependent ecosystems (GDEs) are increasingly threatened worldwide, but the shallow groundwater resources that they are reliant upon are seldom monitored. In t

Groundwater dependent ecosystems (GDEs) are increasingly threatened worldwide, but the shallow groundwater resources that they are reliant upon are seldom monitored. In this study, we used satellite-based remote sensing to predict groundwater levels under groundwater dependent ecosystems across California, USA. Depth to groundwater was modelled for a 35-years period (1985–2019) within all groundwater dependent ecosystems across the state (n = 95,135). Our model was developed within Google Earth Engine using Landsat satellite imagery, climate data, and field-based groundwater data [n = 627 shallow (< 30 m) monitoring wells] as predictors in a Random Forest model. Our findings show that 1) 44% of groundwater dependent ecosystems have experienced a significant long-term (1985–2019) decline in groundwater levels compared to 28% with a significant increase; 2) groundwater level declines have intensified during the most recent two decades, with 39% of groundwater dependent ecosystems experiencing declines in the 2003–2019 period compared to 27% in the 1985–2002 period; and 3) groundwater declines are most prevalent within GDEs existing in areas of the state where sustainable groundwater management is absent. Our results indicate that declining shallow groundwater levels may be adversely impacting California’s groundwater dependent ecosystems. Particularly where groundwater levels have fallen beneath plant roots or streams thereby affecting key life processes, such as forest recruitment/succession, or hydrological processes, such as streamflow that affects aquatic habitat. In the absence of groundwater monitoring well data, our model and findings can be used to help state and local water agencies fill in data gaps of shallow groundwater conditions, evaluate potential effects on GDEs, and improve sustainable groundwater management policy in California.