Anadromous Salmonids in the Delta: New Science 2006-2016

University of California, Davis (UC Davis) | July 1st, 2016

As juvenile salmon enter the Delta, they disperse among its complex channel network where they are subject to channel-specific processes that affect their rate of migrati

As juvenile salmon enter the Delta, they disperse among its complex channel network where they are subject to channel-specific processes that affect their rate of migration, vulnerability to predation, feeding success, growth rates, and ultimately, survival. In the decades before 2006, tools available to quantify growth, dispersal, and survival of juvenile salmon in this channel network were limited. Fortunately, thanks to technological advances, much has been learned over the past decade about the role of the Delta in the life cycle of juvenile salmon. One of the most important advances during the past decade has been the widespread adoption of acoustic telemetry techniques. Use of telemetry has shed light on how survival varies among alternative migration routes and the proportion of fish that use each migration route. Chemical and structural analysis have provided insights about when juveniles left their natal river and provided evidence of extended rearing in the brackish or saltwater regions of the Delta. New advancements in genetics now allow individuals captured by trawls to be assigned to specific runs. Detailed information about movement and survival in the Delta has spurred development of agent-based models of juvenile salmon that are coupled to hydrodynamic models. Although much has been learned, knowledge gaps remain about how very small juvenile salmon (fry and parr) use the Delta. Understanding how all life stages of juvenile salmon grow, rear, and survive in the Delta is critical for devising management strategies that support a diversity of life history strategies.

Analyses of Rotary Screw Trap Sampling of Migrating Juvenile Chinook Salmon in the Stanislaus River, 1996-2005

Delta Stewardship Council (Delta Council) | August 1st, 2006

Annotated Bibliography for Sycamore Alluvial Woodland Habitat Mapping and Regeneration Studies Project

San Francisco Estuary Institute (SFEI) | February 27th, 2017

The California sycamore (Platanus racemosa) is a riparian tree native to California and northern Baja California. California sycamore is the dominant species in sycamore

The California sycamore (Platanus racemosa) is a riparian tree native to California and northern Baja California. California sycamore is the dominant species in sycamore alluvial woodland (SAW), a habitat type defined as open to moderately closed, winter-deciduous broad-leafed riparian woodland dominated by well-spaced Platanus racemosa (Holland 1986), and California sycamore also occurs in the “Platanus racemosa woodland alliance” with various associated species (Sawyer, Keeler-Wolf, and Evens 2009). The central California sycamore alluvial woodland (SAW) habitat type is cited in the Santa Clara Valley Habitat Plan (VHP) as a “very rare and threatened land cover type,” and the VHP contains various goals to conserve and restore SAW habitat. The San Francisco Estuary Institute (SFEI) and H. T. Harvey & Associates (HTH), in conjunction with the Santa Clara Habitat Agency, have undertaken the Sycamore Alluvial Woodland Habitat Mapping and Regeneration Studies Project to assess biotic and abiotic factors that influence California sycamore stand health and regeneration. The study is intended to gather and generate data that will be used by the Santa Clara Habitat Agency to guide acquisition and management of California sycamore habitat to meet its conservation goals. 

Annual Ground-Water Discharge by Evapotranspiration from Areas of Spring-Fed Riparian Vegetation Along the Eastern Margin of Death Valley, 2000–02

U.S. Geological Survey (USGS) | July 1st, 2006

Annual Report of Activities October 1, 2013 to September 30, 2014, American River Group (ARG)

Delta Stewardship Council (Delta Council) | September 30th, 2014

Annual Report of Activities October 1, 2013, to September 30, 2014, Delta Operations for Salmonids and Sturgeon (DOSS) Technical Working Group

Delta Stewardship Council (Delta Council) | October 31st, 2014

Annual Report of Activities, October 1, 2013 to September 30, 2014, Stanislaus Operations Group (SOG)

Delta Stewardship Council (Delta Council) | September 30th, 2014

Anthropogenic debris in seafood: Plastic debris and fibers from textiles in fish and bivalves sold for human consumption

Nature Portfolio (Springer Nature) | September 24th, 2015

The ubiquity of anthropogenic debris in hundreds of species of wildlife and the toxicity of chemicals associated with it has begun to raise concerns regarding the presenc

The ubiquity of anthropogenic debris in hundreds of species of wildlife and the toxicity of chemicals associated with it has begun to raise concerns regarding the presence of anthropogenic debris in seafood. We assessed the presence of anthropogenic debris in fishes and shellfish on sale for human consumption. We sampled from markets in Makassar, Indonesia and from California, USA. All fish and shellfish were identified to species where possible. Anthropogenic debris was extracted from the digestive tracts of fish and whole shellfish using a 10% KOH solution and quantified under a dissecting microscope. In Indonesia, anthropogenic debris was found in 28% of individual fish and in 55% of all species. Similarly, in the USA, anthropogenic debris was found in 25% of individual fish and in 67% of all species. Anthropogenic debris was also found in 33% of individual shellfish sampled. All of the anthropogenic debris recovered from fish in Indonesia was plastic, whereas anthropogenic debris recovered from fish in the USA was primarily fibers. Variations in debris types likely reflect different sources and waste management strategies between countries. We report some of the first findings of plastic debris in fishes directly sold for human consumption raising concerns regarding human health.

Anthropogenic Stressors and Changes in the Clear Lake Ecosystem as Recorded in Sediment Cores

Ecological Society of America (Wiley) | December 1st, 2008

Sediment cores were collected to investigate multiple stresses on Clear Lake, California, USA, through the period of European occupation to the present day. Earlier wor

Sediment cores were collected to investigate multiple stresses on Clear Lake, California, USA, through the period of European occupation to the present day. Earlier workers suggested the hypothesis that the use of mechanized earthmoving equipment, starting in the 1920s and 1930s, was responsible for erosion, mercury (Hg) contamination, and habitat loss stresses. Cores (;2.5 m in depth) were collected in 1996 and 2000 from each of the three arms of the lake. Carbon-14 dating suggests that these cores represent as much as 3000 years of the lake’s history, beginning long before European settlement. Total mercury (TotHg) and methylmercury (MeHg), dry matter, water, carbon, nitrogen, phosphorus, sulfur, and the stable isotopes 13C and 15N were measured at 5-cm intervals. Nearly all parameters show major changes at depths of 58–135 cm, beginning at ca. 1927 (dated with 210Pb). Accepting this date for concomitant major changes in seven cores yields an estimated 8.6 mm/yr average sedimentation rate after 1927. Pre-1927 sedimentation rates were ;1 mm/yr. Total mercury and MeHg, dry matter, phosphorus, and 15N increase significantly, whereas nitrogen, sulfur, carbon, and water content decrease significantly above the 1927 horizon. Both TotHg and MeHg show extremely large increases (roughly 10-fold) above the 1927 horizon. A peak in inorganic deposition rate and minimum values for percentage of water is present at depths corresponding to ca. 1970. Interestingly, the first 75 years of European settlement in the Clear Lake basin (including the most productive years of the Sulphur Bank Mercury Mine) appeared to have had undetectable effects on lake cores. Changes since 1927 were dramatic. The large increase in Hg beginning about 1927 corresponds to the use of heavy equipment to exploit the ore deposit at the mine using open-pit methods. Increases in sediment deposition from increased earthmoving in the basin and sulfate loading from the mine are the most likely explanations for the dramatic changes seen in the post-1927 sections of the cores.

Applied Aquatic Science: A Business Plan for EcoAtlas

San Francisco Estuary Institute (SFEI) | March 7th, 2017

The EcoAtlas suite of tools represents a significant investment of time, energy, thought, scientific testing, technical innovation, and capital from a number of state and

The EcoAtlas suite of tools represents a significant investment of time, energy, thought, scientific testing, technical innovation, and capital from a number of state and federal public agencies, grant programs, and NGOs over the course of its 17-year existence. The toolset embodies the scientific and programmatic investments of the California Wetland Monitoring Workgroup (CWMW), its many related state and federal agencies, non-governmental organizations (NGOs), and private consultants, as well as the goals of the growing set of stakeholders who have expanded the circle of interested parties over the years. It is known by many names -- “WRAMP” being most common -- but in its essence it comprises the following tools:  ● EcoAtlas map viewer ● Project Tracker ● The California Aquatic Resources Inventory (CARI) map and editor tool ● The California Rapid Assessment Method (CRAM) ● The Riparian Zone Estimator Tool (RipZET) Now highly capable, the toolset represents more than science and technology alone, but a distillation of both, customized to meet specific goals associated with the landscape-scale tracking and characterization of California’s aquatic resources. The US Environmental Protection Agency (US EPA), for instance, has supported the toolset through multiple development grants so that the collected tools might be complementary to a still-nascent, statewide wetland protection program. Meanwhile, the state’s Coastal and Delta Conservancies require the use of the tool, and regional water boards -- including SF Bay, Lahontan, and North Coast -- regularly employ the tool for mitigation and restoration project tracking. Essentially, EcoAtlas has proven critical to a variety of programs and represents a successful product of broad-based collaboration. However, it currently stands at a crossroads, and its stakeholders must direct the toolset’s future. The following plan is intended to ensure the continued vitality of the toolset. The plan’s success will depend upon the continued collaboration of the public agencies that have supported the toolset thus far, but it must also integrate principles of resilience as it accounts for the tensions that arise as organizations move in different strategic directions.