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A Summary of Water-Quality and Salt Marsh Monitoring, Humboldt Bay, California

U.S. Geological Survey (USGS) | September 16th, 2022

Summary

This report summarizes data-collection activities associated with the U.S. Geological Survey Humboldt Bay Water-Quality and Salt Marsh Monitoring Project. This work was u

This report summarizes data-collection activities associated with the U.S. Geological Survey Humboldt Bay Water-Quality and Salt Marsh Monitoring Project. This work was undertaken to gain a comprehensive understanding of water-quality conditions, salt marsh accretion processes, marsh-edge erosion, and soil-carbon storage in Humboldt Bay, California. Multiparameter sondes recorded water temperature, specific conductance, and turbidity at a 15-minute timestep at two U.S. Geological Survey water-quality stations: (1) Mad River Slough near Arcata, California (U.S. Geological Survey station 405219124085601) and (2) Hookton Slough near Loleta, California (U.S. Geological Survey station 404038124131801). At each station, discrete water samples were collected to develop surrogate regression models that were used to compute a continuous time series of suspended-sediment concentration from continuously measured turbidity. Data loggers recorded water depth at a 6-minute timestep in the primary tidal channels (Mad River Slough and Hookton Slough) in two adjacent marshes (Mad River marsh and Hookton marsh). The marsh monitoring network included five study marshes. Three marshes (Mad River, Manila, and Jacoby) are in the northern embayment of Humboldt Bay and two marshes (White and Hookton) are in the southern embayment. Surface deposition and elevation change were measured using deep rod surface elevation tables and feldspar marker horizons. Sediment characteristics and soil-carbon storage were measured using a total of 10 shallow cores, distributed across 5 study marshes, collected using an Eijkelkamp peat sampler. Rates of marsh edge erosion (2010–19) were quantified in four marshes (Mad River, Manila, Jacoby, and White) by estimating changes in the areal extent of the vegetated marsh plain using repeat aerial imagery and light detection and ranging (LiDAR)-derived elevation data. During the monitoring period (2016–19), the mean suspended-sediment concentration computed for Hookton Slough (50±20 milligrams per liter [mg/L]) was higher than Mad River Slough (18±7 mg/L). Uncertainty in mean suspended-sediment concentration values is reported using a 90-percent confidence interval. Across the five study marshes, elevation change (+1.8±0.6 millimeters per year [mm/yr]) and surface deposition (+2.5±0.5 mm/yr) were lower than published values of local sea-level rise (4.9±0.8 mm/yr), and mean carbon density was 0.029±0.005 grams of carbon per cubic centimeter. From 2010 to 2019, marsh edge erosion and soil carbon loss were greatest in low-elevation marshes with the marsh edge characterized by a gentle transition from mudflat to vegetated marsh (herein, ramped edge morphology) and larger wind-wave exposure. Jacoby Creek marsh experienced the greatest edge erosion. In total, marsh edge erosion was responsible for 62.3 metric tons of estuarine soil carbon storage loss across four study marshes. Salt marshes are an important component of coastal carbon, which is frequently referred to as “blue carbon.” The monitoring data presented in this report provide fundamental information needed to manage blue carbon stocks, assess marsh vulnerability, inform sea-level rise adaptation planning, and build coastal resiliency to climate change.

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A Summary of Water-Quality and Salt Marsh Monitoring, Humboldt Bay, California

U.S. Geological Survey (USGS) | September 16th, 2022

Summary

This report summarizes data-collection activities associated with the U.S. Geological Survey Humboldt Bay Water-Quality and Salt Marsh Monitoring Project. This work was u

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Age Determination of the Remaining Peat in the Sacramento–San Joaquin Delta, California, USA

U.S. Geological Survey (USGS) | October 9th, 2007

Summary

The Sacramento–San Joaquin Delta of California was once a 1,400 square kilometer (km2) tidal marsh, which contained a vast layer of peat ranging up to 15 meters (m) thi

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Aluminum- and iron-based coagulation for in-situ removal of dissolved organic carbon, disinfection byproducts, mercury and other constituents from agricultural drain water

Journal of Geochemical Exploration (Elsevier) | May 9th, 2019

Summary

Agricultural production on wetland soils can be significant sources of dissolved organic carbon (DOC), disinfection byproduct precursors, mercury and nutrients to downst

Agricultural production on wetland soils can be significant sources of dissolved organic carbon (DOC), disinfection byproduct precursors, mercury and nutrients to downstream water bodies and accelerate land subsidence. Presented as a potential solution for in-situ water quality improvement and land subsidence mitigation, chemically enhanced treatment wetlands (CETWs) were used to leverage both coagulation and wetland processes. In this study, we evaluated the performance of coagulants ferric sulfate (Fe dosing) and polyaluminum chloride (Al dosing) to remove pollutants from agricultural drain water using the coagulation system designed for CETWs. Both coagulation treatments removed over 70% DOC from source waters, resulting in removal efficiencies (mg-DOC removed per mg-metal dosed) of 1 under Al dosing and 0.5 under Fe dosing. Coagulation by both treatments preferentially removed UV254 active compounds compared to the bulk DOC concentration, suggesting coagulation targeted aromatics more effectively. Phosphates and haloacetic acids were also removed more readily, whereas trihalomethanes, dissolved organic nitrogen and filtered mercury species were removed at similar or lower rates than DOC. Dissolved inorganic nitrogen was not amenable to coagulation and removal was not observed. Freundlich, Langmuir and Monod models explained 33% of the variance in DOC removal for Al dosing and 78–89% of the variance for Fe dosing. All three models indicated Al dosing had higher removal efficiency and affinity for DOC than Fe dosing under study conditions, but when used to predict maximum removal efficiency there was no cohesiveness between the three models due to different model assumptions. Consideration of fluorescence dissolved organic matter and UV254 as surrogates for DOC concentration showed both were equally suitable before coagulant application, but as surrogates after coagulant application, neither could be deemed more fit as a surrogate since both were shown suitable for different treatment scenarios.

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An assessment of future tidal marsh resilience in the San Francisco Estuary through modeling and quantifiable metrics of sustainability

Frontiers in Environmental Science (Frontiers) | November 25th, 2022

Summary

Quantitative, broadly applicable metrics of resilience are needed to effectively manage tidal marshes into the future. Here we quantified three metrics of temporal marsh

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An Evaluation of Compensatory Mitigation Projects Permitted Under Clean Water Act Section 401 by the California State Water Resources Control Board, 1991-2002

California State Water Resources Control Board (SWRCB) | August 2nd, 2008

Summary

The purpose of this project, which was funded by the California State Water Resources Control Board (SWRCB), was to evaluate the compliance and wetland condition of compe

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Analysis of the costs and benefits of using marsh restoration as a sea level rise adaptation strategy in San Francisco Bay

Bay Institute | February 22nd, 2013

Summary

The purpose of this study is to examine opportunities to protect San Francisco Bay’s recovering tidal marsh ecosystems while helping bayshore communities to manage the

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Applied Aquatic Science: A Business Plan for EcoAtlas

San Francisco Estuary Institute (SFEI) | March 7th, 2017

Summary

The EcoAtlas suite of tools represents a significant investment of time, energy, thought, scientific testing, technical innovation, and capital from a number of state and

The EcoAtlas suite of tools represents a significant investment of time, energy, thought, scientific testing, technical innovation, and capital from a number of state and federal public agencies, grant programs, and NGOs over the course of its 17-year existence. The toolset embodies the scientific and programmatic investments of the California Wetland Monitoring Workgroup (CWMW), its many related state and federal agencies, non-governmental organizations (NGOs), and private consultants, as well as the goals of the growing set of stakeholders who have expanded the circle of interested parties over the years. It is known by many names -- “WRAMP” being most common -- but in its essence it comprises the following tools: ● EcoAtlas map viewer ● Project Tracker ● The California Aquatic Resources Inventory (CARI) map and editor tool ● The California Rapid Assessment Method (CRAM) ● The Riparian Zone Estimator Tool (RipZET) Now highly capable, the toolset represents more than science and technology alone, but a distillation of both, customized to meet specific goals associated with the landscape-scale tracking and characterization of California’s aquatic resources. The US Environmental Protection Agency (US EPA), for instance, has supported the toolset through multiple development grants so that the collected tools might be complementary to a still-nascent, statewide wetland protection program. Meanwhile, the state’s Coastal and Delta Conservancies require the use of the tool, and regional water boards -- including SF Bay, Lahontan, and North Coast -- regularly employ the tool for mitigation and restoration project tracking. Essentially, EcoAtlas has proven critical to a variety of programs and represents a successful product of broad-based collaboration. However, it currently stands at a crossroads, and its stakeholders must direct the toolset’s future. The following plan is intended to ensure the continued vitality of the toolset. The plan’s success will depend upon the continued collaboration of the public agencies that have supported the toolset thus far, but it must also integrate principles of resilience as it accounts for the tensions that arise as organizations move in different strategic directions.

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Assessment of the condition of San Francisco Bay Area depressional wetlands

California State Water Resources Control Board (SWRCB) | March 23rd, 2017

Summary

Depressional wetlands are the most abundant, yet most threatened wetland type in California. Despite their relatively ubiquitous nature, they are poorly characterized, an

Depressional wetlands are the most abundant, yet most threatened wetland type in California. Despite their relatively ubiquitous nature, they are poorly characterized, and unlike streams, they are not subject to any systematic ambient monitoring and assessment in California. Consequently, decisions regarding protection, restoration, and management, such as issuance of Section 401 water quality certifications or prioritization of projects for wetland restoration grant funding, are usually made without the benefit of any regional context of condition, knowledge of predominant stressors, or rigorous documentation of reference conditions. The goals of this study were to apply tools for ambient monitoring of depressional wetlands in the San Francisco Bay region to accomplish the following: 1) To evaluate the regional condition of depressional wetlands in this portion of northern California, and 2) To evaluate the relationship between condition and stress by sampling both local stressors (intensity of direct wetland use, water chemistry, and sediment chemistry) and landscape stressors (adjacent land use, flow diversions, and road density). Once achieved, these goals should establish the foundation for developing a robust ambient depressional wetland monitoring program. This study included perennial (have surface water year round) and seasonal (lack surface water for part of the year) depressional wetlands as defined by Brinson (1993) located within the boundaries of the San Francisco Bay Regional Water Quality Control Board. Depressional wetlands in this study includes both natural water bodies such as sag ponds and small lakes, as well as created wetlands such as abandoned or active stock ponds, aesthetic ponds, and irrigation/treatment ponds. Wetlands were not considered for this study if they were concrete lined, marine influenced, wastewater treatment ponds, livestock wastewater ponds, riverine (i.e., dominated by riverine hydrology), dry, or vernal pools. It is likely that a majority of wetlands sampled in this study would be considered waters of the State of California; the field teams did not perform a regulatory-based delineation of a wetland as part of this study. Thirty wetlands in the San Francisco Bay area were sampled during the spring of 2014, including both perennial and seasonal wetlands. The proportion of wetlands in the region considered “likely intact” (scores in the upper 50th percentile of the range found at reference sites) varied by indicator.

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Bathymetry and Digital Elevation Models of Coyote Creek and Alviso Slough, South San Francisco Bay, California

U.S. Geological Survey (USGS) | March 15th, 2018

Summary

In 2010 the U.S. Geological Survey (USGS), Pacific Coastal and Marine Science Center completed three cruises to map the bathymetry of the main channel and shall

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A Summary of Water-Quality and Salt Marsh Monitoring, Humboldt Bay, California

A Summary of Water-Quality and Salt Marsh Monitoring, Humboldt Bay, California

Age Determination of the Remaining Peat in the Sacramento–San Joaquin Delta, California, USA

Aluminum- and iron-based coagulation for in-situ removal of dissolved organic carbon, disinfection byproducts, mercury and other constituents from agricultural drain water

An assessment of future tidal marsh resilience in the San Francisco Estuary through modeling and quantifiable metrics of sustainability

An Evaluation of Compensatory Mitigation Projects Permitted Under Clean Water Act Section 401 by the California State Water Resources Control Board, 1991-2002

Analysis of the costs and benefits of using marsh restoration as a sea level rise adaptation strategy in San Francisco Bay

Applied Aquatic Science: A Business Plan for EcoAtlas

Assessment of the condition of San Francisco Bay Area depressional wetlands

Bathymetry and Digital Elevation Models of Coyote Creek and Alviso Slough, South San Francisco Bay, California

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