2024 5-Year Review: Summary & Evaluation of Northern California Steelhead

National Oceanic and Atmospheric Administration (NOAA) | July 9th, 2024

Many West Coast salmon and steelhead (Oncorhynchus spp.) stocks have declined substantially from their historic numbers and now are at a fraction of their historical abun

Many West Coast salmon and steelhead (Oncorhynchus spp.) stocks have declined substantially from their historic numbers and now are at a fraction of their historical abundance. Several factors contribute to these declines, including: overfishing, loss of freshwater and estuarine habitat, hydropower development, poor ocean conditions, and hatchery practices. These factors collectively led to the National Marine Fisheries Service’s (NMFS) listing of 28 salmon and steelhead stocks in California, Idaho, Oregon, and Washington under the Federal Endangered Species Act (ESA). The ESA, under section 4(c)(2), directs the Secretary of Commerce to review the listing classification of threatened and endangered species at least once every 5 years. A 5-year review is a periodic analysis of a species’ status conducted to ensure that the listing classification of a species as threatened or endangered on the List of Endangered and Threatened Wildlife and Plants (List) (50 CFR 17.11 – 17.12; 50 CFR 223.102, 224.101) is accurate (USFWS and NMFS 2006; NMFS 2020). After completing this review, the Secretary must determine if any species should: (1) be removed from the list; (2) have its status changed from endangered to threatened; or (3) have its status changed from threatened to endangered. If, in the 5-year review, a change in classification is recommended, the recommended change will be further considered in a separate rule-making process. The most recent 5-year review analysis for West Coast salmon and steelhead occurred in 2016. This document describes the results of the 2024 review of ESA-listed Northern California steelhead (NC steelhead). A 5-year review is: • A summary and analysis of available information on a given species; • The tracking of a species’ progress toward recovery; • The recording of the deliberative process used to make a recommendation on whether or not to reclassify a species; • A recommendation on whether reclassification of the species is indicated.

A conceptual model for floodplains in the Sacramento-San Joaquin Delta

University of California, Davis (UC Davis) | October 3rd, 2012

Floodplains are among the most biologically productive and diverse ecosystems on Earth and they provide significant benefits to society such as attenuation of floodwaters

Floodplains are among the most biologically productive and diverse ecosystems on Earth and they provide significant benefits to society such as attenuation of floodwaters, groundwater recharge, filtration of nutrients and sediments, carbon sequestration, fisheries productivity and recreation.  However, floodplains are also among the most converted and threatened ecosystems.  Floodplain habitats in the Sacramento-San Joaquin Delta, and throughout California’s Central Valley, have been greatly reduced from their historic extent and key processes that create and maintain floodplains, such as flood flows and meander migration, have been greatly altered.  These widespread alterations to habitats and processes have lead to declines in many species’ populations in California’s Central Valley and Delta, creating challenges for both environmental and water management. To address these challenges numerous entities and programs are now focused on restoring floodplains and other Delta habitats.  This paper provides a conceptual model for floodplains that characterizes the key features and identifies the critical processes, drivers, and linkages that allow floodplains to produce a variety of functional outputs of management importance.  These outputs include: (1) the floodplain habitat mosaic, including riparian vegetation and its associated wildlife; (2) spawning and rearing habitat for native fish; and (3) food-web productivity that can support native fish on the floodplain as well as be exported to downstream ecosystems.  The model emphasizes that the production of these outputs from floodplains requires vertical and lateral hydrological connectivity across a broad range of flow conditions.  For example, long-duration flooding in the spring promotes native fish spawning and food-web productivity that benefits native species.

A Framework for Research Addressing the Role of Ammonia/Ammonium in the Sacramento-San Joaquin Delta and the San Francisco Bay Estuary Ecosystem

CALFED | April 13th, 2009

The Sacramento-San Joaquin Delta and the San Francisco Bay Estuary ecosystem has been drastically altered by human activity since at least the mid-1800s, leading to numer

The Sacramento-San Joaquin Delta and the San Francisco Bay Estuary ecosystem has been drastically altered by human activity since at least the mid-1800s, leading to numerous physical, chemical and biological changes [e.g., see Healey (2008) and Healey et al. (2008) for overviews]. Recent concerns include (1) the precipitous decline of four fish species that inhabit the Delta (collectively referred to as the pelagic organism decline, or POD) and (2) apparent major shifts in community composition of algae and higher trophic levels in the Delta and downstream in Suisun Bay. The four POD species of concern are delta smelt (longfin smelt), threadfin shad and striped bass. One of the potential causes of the POD and the community changes is the discharge of increasing concentrations of a combination of ammonia (NH3) and ammonium (NH4+) into the Delta ecosystem and eventually into Suisun Bay. For brevity, we hereafter abbreviate the ammonia/ammonium combination as ammonia/um. To address the potential for adverse effects of ammonia/um on the Bay-Delta ecosystem, a ammonia/um workshop was convened by the CALFED Science Program on 10 and 11 March 2009 in Sacramento, California. We participated as an expert panel and were charged with preparing a framework for research that will address the role of ammonia/um in the Bay-Delta ecosystem. In this report, we present our perception and interpretation of the major concerns related to ammonia/um in the Bay-Delta ecosystem; a conceptual framework of the major physical, chemical and biological drivers controlling the ecosystem (including POD populations); our assessment of the major research needs; and concluding remarks. For some research needs, we recommend specific types of research and provide literature citations; however, for other research needs we recommend general approaches for which targeted research will be determined later. In many ways, Bay-Delta research is breaking new ground by tackling a large-scale, complex freshwater-estuarine ecosystem affected by multiple, interactive stressors. Consequently, the Bay-Delta research program will establish a template for future research and management decisions in other hydrologically, biogeochemically, and trophically-similar systems, rather than relying on paths trodden by others.

A freshwater conservation blueprint for California: prioritizing watersheds for freshwater biodiversity

Society for Freshwater Science | April 18th, 2018

Conservation scientists have adapted conservation planning principles designed for protection of habi- tats ranging from terrestrial to freshwater ecosystems. We

Conservation scientists have adapted conservation planning principles designed for protection of habi- tats ranging from terrestrial to freshwater ecosystems. We applied current approaches in conservation planning to prioritize California watersheds for management of biodiversity. For all watersheds, we compiled data on the pre- sence/absence of herpetofauna and fishes; observations of freshwater-dependent mammals, selected invertebrates, and plants; maps of freshwater habitat types; measures of habitat condition and vulnerability; and current manage- ment status. We analyzed species-distribution data to identify areas of high freshwater conservation value that op- timized representation of target taxa on the landscape and leveraged existing protected areas. The resulting priority network encompasses 34% of the area of California and includes ≥10% of the geographic range for all target taxa. High-value watersheds supported nontarget freshwater taxa and habitats, and focusing on target taxa may provide broad conservation value. Most of the priority conservation network occurs on public lands (69% by area), and 46% overlaps with protected areas already managed for biodiversity. A significant proportion of the network area is on private land and underscores the value of programs that incentivize landowners to manage freshwater species and habitats. The priority conservation areas encompass more freshwater habitats/ha than existing protected areas. Land use (agriculture and urbanization), altered fire regimes, nonnative fish communities, and flow impairment are the most important threats to freshwater habitat in the priority network, whereas factors associated with changing climate are the key drivers of habitat vulnerability. Our study is a guide to a comprehensive approach to freshwater conservation currently lacking in California. Conservation resources are often limited, so prioritiza- tion tools are valuable assets to land and water managers.

A Review of Delta Fish Population Losses from Pumping Operations in the Sacramento-San Joaquin River Delta

Sacramento Regional County Sanitation District (RegionalSan) | January 30th, 2010

To reduce fish loss at the pumps, the state and federal water export facilities operate facilities which are designed to salvage fish from the water and return them to th

To reduce fish loss at the pumps, the state and federal water export facilities operate facilities which are designed to salvage fish from the water and return them to the Delta. Fish facilities include the SWP Skinner Fish Protection Facility and CVP Tracy Fish Collection Facility. The fish facilities utilize two sets of louvers to prevent fish from entering further into water project operations and ultimately the powerful pumps. The louvers concentrate fish so that they can be removed prior to the water diversions. However, these fish salvage operations are inefficient, as high numbers of fish are lost due to predation in the waterways leading to the fish facilities, and the louvers are inefficient.

An Alternative Technique to Quantify the Incidental Take of Listed Anadromous Fishes at the Federal and State Water Export Facilities in the San Francisco Bay-Delta Estuary

National Marine Fisheries Service (NMFS) | July 1st, 2011

Anadromous Salmonids in the Delta: New Science 2006-2016

University of California, Davis (UC Davis) | July 1st, 2016

As juvenile salmon enter the Delta, they disperse among its complex channel network where they are subject to channel-specific processes that affect their rate of migrati

As juvenile salmon enter the Delta, they disperse among its complex channel network where they are subject to channel-specific processes that affect their rate of migration, vulnerability to predation, feeding success, growth rates, and ultimately, survival. In the decades before 2006, tools available to quantify growth, dispersal, and survival of juvenile salmon in this channel network were limited. Fortunately, thanks to technological advances, much has been learned over the past decade about the role of the Delta in the life cycle of juvenile salmon. One of the most important advances during the past decade has been the widespread adoption of acoustic telemetry techniques. Use of telemetry has shed light on how survival varies among alternative migration routes and the proportion of fish that use each migration route. Chemical and structural analysis have provided insights about when juveniles left their natal river and provided evidence of extended rearing in the brackish or saltwater regions of the Delta. New advancements in genetics now allow individuals captured by trawls to be assigned to specific runs. Detailed information about movement and survival in the Delta has spurred development of agent-based models of juvenile salmon that are coupled to hydrodynamic models. Although much has been learned, knowledge gaps remain about how very small juvenile salmon (fry and parr) use the Delta. Understanding how all life stages of juvenile salmon grow, rear, and survive in the Delta is critical for devising management strategies that support a diversity of life history strategies.

Analyses of Rotary Screw Trap Sampling of Migrating Juvenile Chinook Salmon in the Stanislaus River, 1996-2005

Delta Stewardship Council (Delta Council) | August 1st, 2006

Annual Report of Activities October 1, 2013 to September 30, 2014, American River Group (ARG)

Delta Stewardship Council (Delta Council) | September 30th, 2014

Annual Report of Activities October 1, 2013, to September 30, 2014, Delta Operations for Salmonids and Sturgeon (DOSS) Technical Working Group

Delta Stewardship Council (Delta Council) | October 31st, 2014